Scaffold JGI25383J37093

Basic Information
Taxon OID	3300002560 Open in IMG/M
Scaffold ID	JGI25383J37093_10000093 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002560 Open in IMG/M

Scaffold ID

JGI25383J37093_10000093 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16252
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16252

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (55.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009132	Metagenome / Metatranscriptome	322	N
F016129	Metagenome / Metatranscriptome	249	N
F018143	Metagenome / Metatranscriptome	236	N
F031428	Metagenome	182	N
F032621	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25383J37093_1000009310	F009132	GAGG	MVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVVFAGSLVVAWWRVGIAVLRIRINDSQNPITVKLVSTSKAEAVFKALKG*
JGI25383J37093_1000009312	F031428	N/A	MGKMPERLVTGIVVMSAIRVGDSDLVKILRGVAVIVAAALMILPAYLNYEIWKAGFNPVVSMAISLQLFAIGIVLFILAVGKERLAPKSQPQ*
JGI25383J37093_1000009318	F018143	GGA	MLYTHRTELDRADPSGSALTVPKFMISMREKAFAVISSEAKDRGVTVQELLRAVIVPEWAKENLQPSTNPQTTMQITPDQTKSSMSAKQRDSKLAITVGQLRT*
JGI25383J37093_100000932	F016129	AGAAGG	LLGWHGEDSAGSNLYQTTLLTSILEYGIILFFGLWLVTEYFYNIYEQQYFGSFNPVFLVVVLMIASAYGFTRLISTIRTVLKPPKKTSKPEDDY*
JGI25383J37093_100000935	F032621	N/A	VNFARFFRQNVISTIEAGLFRALSSAGSNLAVQTAKEVHIGRLPPASLVYWLRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSVFLVKNLLGYGPEVLKGPNKHLTIGMGSYIIWMIFTTILLYTVLDPHPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25383J37093_10000093

Overview

Ecosystem & Geography

Associated Families

Sequences