 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002560 Open in IMG/M |
| Scaffold ID | JGI25383J37093_10000002 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34134 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (68.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005263 | Metagenome / Metatranscriptome | 406 | Y |
| F023823 | Metagenome | 208 | N |
| F042845 | Metagenome / Metatranscriptome | 157 | Y |
| F046962 | Metagenome / Metatranscriptome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25383J37093_1000000220 | F042845 | AGGAG | MDTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD* |
| JGI25383J37093_1000000221 | F046962 | GGA | MEEIANSGYPXETTSRTVLXDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI* |
| JGI25383J37093_1000000226 | F005263 | N/A | LERRARRIFTIDHDVSEKIDELAGGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSXPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGXXDSRTIXLRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLXCKIGXASTLRTIVPKSFXEQLAKQSIERTVGS* |
| JGI25383J37093_100000027 | F023823 | GGGGG | LEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDXIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |