Scaffold JGI25385J37094_10040843

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10040843
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004117	Metagenome / Metatranscriptome	452	Y
F004347	Metagenome / Metatranscriptome	442	Y
F008487	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100408431	F004117	AGGTGG	LALRKRIVSRPGARRPPTEPLVPLTTTCRRYRVAGACLLFVLLMLPGASASDPGPAPASAALTASVSDTPDGVRLRIQASGDVEPGSVEIRFAGRKAVVLARDAEGRAIRSQPLRLTAPVVEEGSSADYDADGALVMTLRKQNTAQDAGPTGDPEAAAR*
JGI25385J37094_100408432	F004347	AGG	VQPETASWLNESRGSLGAAQSRFNDVSSMDGTGAGALFMSAEYAVKAVIVEHYGFLPPSFKTHHRIVNLSHLIGLWWQLPPDLRAHLAEMAPLDPNVLYPRETRLPRYPPRTYETLVSSSSKAEWQQRLATAPRFIQYIERDVIGNPAAFGKLTF*
JGI25385J37094_100408434	F008487	N/A	MNANDVAGEGLRLVSRLAGVAISVPVVAGFVLLGAAVLVGRSLLDVGRKLLEARPRAQEPRKAA*