Scaffold JGI25385J37094_10025543

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10025543
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2101
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015579	Metagenome / Metatranscriptome	253	Y
F019106	Metagenome	231	N
F097023	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100255431	F097023	N/A	AQHEFWPWMVLTPTLQMFAGLFLATCLATAWASFQTDVGRIRVLLPLDVIFPSLALLAVAIHWNVILIESPGTAVTGVWVFIYAFVAVGSAYLYFFSRKTRVM*
JGI25385J37094_100255432	F019106	AGTAGG	MASQVPLLTLAKFLVLIGGIVLLIGGILQAIXVRALMDFGTNLARLGSLTGIVVGILVGILALVGSREVVNPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKT*
JGI25385J37094_100255433	F015579	GAGG	MPRAANVTRDDILNSLTKHAHPQEPEETTPETEEAAGFQGPNGTAVEARARNRGSARGAIVIFLGGFAAVWLYGYVTGAYDIPYLRGVTESPAVRVGVQLASSNPILFGAVSVSVLLGALYLLHRKKN*