Scaffold JGI25385J37094_10004277

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10004277
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4964
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F012334	Metagenome	281	Y
F017278	Metagenome	241	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100042772	F017278	N/A	MSSGDAVQVRSFIFKYRFSEAEMSEKKNMRDEVRREAKEALEAMRKDLQQLSNDLVAASKTLKSSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQAKLLRTYKKFLIKQVDFIEKRLKQTE*
JGI25385J37094_100042774	F012334	N/A	MSSKRPVELGRDARLFLLFISEVNLVMGVLFFVYPSLVIGLWPWTVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVAVVLAVSQGGGYVISTWTGYFLVAGLGNFYLLNRYGWPRKPQDRLGPGQPWKTARWFFRIQTVVVGVFGIMMLLLPDVAQHQFWPWLVKTPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDVIFPSLALLAVGIHWDVISIESPGTPVTGVWVFIYAFVAVGSACLYFFSRKPATT*
JGI25385J37094_100042778	F003305	AGG	MGDLATWEEPRELDTDNEAVISLYDGIKKILEKQPKPKAKPSPGLPREAKHILRCGRILKVDIERKLVVITVMKTDGELHQLRIEANQD*