Scaffold JGI25385J37094_10002983

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10002983
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5746
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011833	Metagenome	286	Y
F016379	Metagenome	247	Y
F028762	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100029832	F016379	N/A	MVIAILLGGFSSEYLSNVYFRIWVDNNFPQLSMLLTGQVDALLIGVALGGTILLIQRMKNEARMAGETASTFGRPSSLTQNSELLPNHATPTTIVEATWETPEQVLGELEKHDF*
JGI25385J37094_100029833	F011833	AGGAGG	MKAFIASFVKGQVLLLAPQPVLLMLIIFNKVSLYYSAPVIVSLTVLWGWFDYSGKAQRRGASVLRKLERLVDDFGWLNFQEGGGAGNEMVVTLLDKASFGSSTLTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLSSLEGEREGFSTFKTRLSELRGRANAFLQGLRDEGLPVSETKVRALEVDPWFKTGTEISETKESTS*
JGI25385J37094_100029836	F028762	AGGAG	MSETLERQERWKQQKEEADRQRMGGAYIQGFIETAAALVGEEPLFSKGYWKCASGCKPFGFGLARTPRECPGCHKQLILWVPGP*