Scaffold JGI25385J37094_10002260

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10002260
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6376
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Symbiobacteriaceae → Symbiobacterium → Symbiobacterium thermophilum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005203	Metagenome	408	Y
F027134	Metagenome / Metatranscriptome	195	Y
F043318	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100022601	F027134	GGAGG	MMSLPSYTSIVAGLPRTRTTDLDWYVRVEFGDRESAWLVNGLRSNHSASTSSEPENDGRLRRFTQAITTFLF*
JGI25385J37094_100022602	F043318	GGAG	VPTVLVNAVVVVIAFYFGSHAVSTPPAVPPGQPAPHHPRLVRILLFLGFAGLTAWFLSRNPSLQGIPPALLAVLEVLGGYVLGATASWLVHRRAHETRVRHRLATIFRDVVAAGALGFTAYICFALVTNQGGVFAGRADQALSLVVTFYFGSRVIGH*
JGI25385J37094_100022606	F005203	GAG	MKPTTRDHVVAATHFVLGPSNFVVXRLPDRWDLRLGRHPMDVDYTVVYDGVRWAQEGRASGLLVDAQARRAIELSLRTARGSIPPPKLDESRPGMCTMGGHSASYVLGSAHFGLLGTKLYQVLHLSYRCDETQRIVDLRFMHRGTAELLEGLLTPLAGTRCH*