Scaffold JGI25385J37094_10000204

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000204
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13760
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F019106	Metagenome	231	N
F035244	Metagenome	172	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000020410	F097102	GAGG	LEIEVYNCGCRVRIYEVEFGESKNDLTERPSLISDYSPCSKHRYARKIPPREARLLKVRGEHEAFLNE*
JGI25385J37094_1000020411	F019106	N/A	MGDRIISWKMASQVPLLTLSRLLVLIGGIVLLVGGILEAANVGGLMDLGTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGIVVFIGGLIGLVSHYVKV*
JGI25385J37094_1000020412	F012334	N/A	MSSKRPVELGREVRLFLLFLSEINLVMGALFFMYPNLVIGVWPWPVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILLLVGGTFFGITSIVSIVLAASQGGGYVISTWTGYFIVASLGNFYLLYRYRWSRKPQDRLPAGQPWRTARWFFRIQTVVVGVFGIMMLLLPEVAQQQFWPWHVATPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDVIFPSLALFAVWIHWDVISRESPSVPVTGVWVFIYAFVAVGSAYLHFFSRKKMVM*
JGI25385J37094_1000020414	F017278	GAG	MRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTERFVQDTGPKVSAGLEETMETFRRTMTTIDKQTKPQQAKLLRTYKRFLTKQVDFIEKRLKQTE*
JGI25385J37094_100002048	F035244	GAG	MSKRDWVNSPRINLISLLAGALALASLFLPWWGLDASGFGSSVSPRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTRNIRPLIGSFILSVLTPIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFQIGFYLYVVAGTLTLVGLGFHRIFHKTIPTTQKPSSQLSKSTN*
JGI25385J37094_100002049	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQTRQPEGPAKPREANVTRNDILNSLTKYAHPQEGQVREAVEIQDPVQVSDSGQRAIPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAQLVSSSPILFGAVSVSVLLGALYLRHRKKN*