Scaffold JGI25385J37094_10000032

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000032
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21534
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_100000321	F013876	AGGAG	MSSIDDPILKELLAALKEDTQRMAADLLSIITTNALIAVFALFLAVASLVRIILFPPRFGPGPVPGLFETALTFVLFALSVISIYNLLRLRERYARLQALAEKLGR*
JGI25385J37094_1000003210	F025249	GAG	MRSLCSRFNALPAENKDPSAESDTHSPPPSVFGIIVVGLLAGLVVGLLAGPNFTLQGFFLGFAGGALITAGLYFYTAGRSRPAR*
JGI25385J37094_1000003211	F028763	AGGAG	MSEPARSKRRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKETVTG*
JGI25385J37094_1000003212	F014601	AGGAG	MTGSKDDSRRPSPIPRAVLAGLIAGIAAGIVSFYVVGPVGLIIGFIAGAIVGSRTVLLTNKAREQDQ*
JGI25385J37094_100000325	F004426	GAG	MRQEIPALASRRRAHPARSVHSMVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIMIPESGSTIEYEEWGNGMDLSGLREFLTKGKLTDEGFSSKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGEQVKPEELRGSTLLPVSIATEYGRITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNEFEHDSAQWRVFEKAMRGFVRNRVYKFLRQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLTPRVTPKINVVPGKTRKEIVLGERKHRKGKRHSREVTRSIIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVYVNMDHPMWYVEAGMNPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA*