Scaffold JGI25385J37094_10000024

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000024
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23213
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016652	Metagenome / Metatranscriptome	245	Y
F024521	Metagenome / Metatranscriptome	205	N
F037119	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000002421	F037119	AGG	MVRVVLELRCVKCEVKFERSFEERRRQLNYSEGEMLQLDENTCPNHCGGGWFAIEKQHPIRKFKRRFGQDD*
JGI25385J37094_1000002422	F024521	GGA	LKKTTRKSPQLLNGFPHIPFDEFPLKRSEDLVVMLEKNMPEGAKVEVTPMEDSHHSPCMEEMIAIMVHDIEEGKDSSEIYSIYQFCPACHIGVRVL*
JGI25385J37094_100000243	F016652	GAGG	MVLIGAVFVLLGIVAESLYISNEKVAYNGATISANAYMISGLFFILLGLVLTLSGARIPKIRIPHL*