Scaffold JGI25385J37094_10000023

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000023
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23255
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012006	Metagenome / Metatranscriptome	284	Y
F015708	Metagenome	252	Y
F015984	Metagenome	250	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000002318	F015984	GGA	MGFLSVMGKITIGIAIIAPVVALYFAMTSSDALGLTGVVGLLAGSGIFCISGLYAGLLGIKVEKLSARLDPVSRQRPRTKAKNLIKAECPIDHREGVFVHVSPFRSDAVPDGLDLFLGSCGHEVHRGEIEAEA*
JGI25385J37094_1000002325	F015708	AGAAGG	MSHSRTVQRSVTPDSVKALMIIEAIIIAFFSFWLANEYVYNVYFRVYVNSVFVEHFTTYTIALGLGIGLAGTAAAAALYKNLREAKVKLESVTPRIRGSIEKMLANVPSIEGKPAVPSISPVSSSQSAPEAPGAALVSVPTASTPPAPEEKK*
JGI25385J37094_100000233	F012006	AGG	MNRIDLSTPSDVITLRGYETCPTIKSDNDLITVIVVKSDGNSHSIEAGSNHGDDNYYEPLESRSVGEARQ*