Scaffold JGI25385J37094

Basic Information
Taxon OID	3300002558 Open in IMG/M
Scaffold ID	JGI25385J37094_10000004 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002558 Open in IMG/M

Scaffold ID

JGI25385J37094_10000004 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40471
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (62.79%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

40471

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (62.79%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F031371	Metagenome	182	Y
F035245	Metagenome / Metatranscriptome	172	N
F048197	Metagenome	148	Y
F091681	Metagenome	107	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000000423	F031371	N/A	LSKGFSKWIYRLTLARWYYNYAWGWVIGYFLSTFTMIVTIYYLIPGLRDLISFPLFLGGSGILLVGGGWVLGKVLVKRFRIQPMENYISSEVNPFTNAALTAKERVYWNAMVVLLKREMARTPDAEVQRCVEQLKTYINGQVPFNFDELDNFQLGEQQDLDVPLPKNVTKISLATELDEGTDTAVAN*
JGI25385J37094_1000000434	F091681	GAGG	MKEGKKAADVEKALQHWTGSVIDPQLKPVQAKTRQLAEAALSLASSLESRCREFIRNTKYDMSGLGDSRRLRAAMALNRVSGEIVTASGEFLKSNPSDSISKLETSILRLLRVAGSSYNESVRAMGSHYASERGWLRAEIEGLQRVNHQTSQFRTRTRDITSIRDQIQERSKLLVENLTTLQNLESSRVQLEKEIQQLAYNEGSLLEAIERIESDSKIHTLNAKEAELKALRKRLLNEEMSRLGGVFAKVLSLHHRGEVHTHLQAIEVLTRYVKTPLTTLAKESDGYPELTDLLEGLCESIESNRLPLGEKKARKTLERAKRIINGSLRPIQKEAREAFAARSQILRSPNVRHLRSQRSDLRAEYTRSRASKQSLESRVKSIGEEASLLKAQAKTHLDAIDELATQNFNKSVPRELREEVQSLAH*
JGI25385J37094_1000000436	F048197	N/A	MMIFVQVILGGGSFVLGWDVRYHLVWGTLTFIVLIVSTVLARRDFGVNSTLFKVALAVIVDFVVQGILGLFAFGSGVAVVVHLTNAFLLAVIVTYLISFADSADKASTTILSQTQTAPTGNLRG*
JGI25385J37094_100000047	F035245	AGGAGG	METLREEEVLRLEEALLKRMEERLTPLMEQAARDAARAAMQRLRLNMMAHISRHEETIQRLAKAALAENHVPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25385J37094_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences