Scaffold JGI25381J37097_1009129

Overview

Basic Information

• Taxon OID: 3300002557
• Scaffold ID: JGI25381J37097_1009129
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1756
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003391	Metagenome / Metatranscriptome	489	N
F018144	Metagenome / Metatranscriptome	236	N
F054603	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25381J37097_10091291	F054603	GAGG	MSLVKWARKTVDRNRRSRKAISTIMANLTMLIIVVSLSSLLFVWAVSSFGAYQGGAGYWFSSRSVANQERMSVEGAYFYQNGGLNYALVYVRN
JGI25381J37097_10091292	F018144	GGA	MKSLRWVRKDKKGINTILASLLMVVIVVVAAVMVYAWSTGLLSSLLVQNPVPKESLNYDSFNYGPNSNVTIFIRNSGSAGVTLQTYYVKDNSGNQYTSPSTWTAGPIAPNAVNATLIKIYTQCGTCTYSNGAPTSGFQFVAGNSYTITVVTTRNNQFTWSLTK*
JGI25381J37097_10091293	F003391	AGGAG	MRKIRKITRDKKGIDTILAALLMVVIVVVAAVMVYAWSTGLLSALLVQNPVPKESMNFENFAFNTNNMNLTLNVRNTGSVAIAFASYYVKDSNGNQYARLSWPTDNAGKYPAAVNPNGLISVNIAISSACGSSCTGATYQFSSGLSYTVTLVTTRNNQFVWQGTR*