Scaffold JGI25381J37097_1001017

Overview

Basic Information

• Taxon OID: 3300002557
• Scaffold ID: JGI25381J37097_1001017
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4319
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012762	Metagenome	277	Y
F013280	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25381J37097_10010172	F012762	GAG	LPTSYQYDPALGTIDSFPTILHGRASFSFDINPESLQKALVSALASLRANPKSREITLTDRDGYLNGQLTFRVGIGNGDSFDILDSREEERVMNRIENRGPFKMLDLVFQLHYSVSDGRRHRVHEDHYILRLVFQPGRVEILVHHLKGIRRVEPDELIRLIIQELNVELTRDRYSQIGLEAVDIN*
JGI25381J37097_10010175	F013280	N/A	LNAVRLLFWSAVAYALLLVLVRGVFPSESAPTISLTGIPLIVIVVMIARDLTRRSTSPTVRRAIATTAGFRGNPVQFLSGQFRVAANASNSYFENVVRARLRELLTTKVALEAGLENETVRRILSDPRDGPELLEDETLYRMLYGPTPQGGLARLNLIRDAIDLIGAWKG*