Scaffold JGI25381J37097

Basic Information
Taxon OID	3300002557 Open in IMG/M
Scaffold ID	JGI25381J37097_1000521 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002557 Open in IMG/M

Scaffold ID

JGI25381J37097_1000521 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5387
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5387

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005263	Metagenome / Metatranscriptome	406	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25381J37097_10005211	F003037	N/A	QSVGLLWVEFKCPLCGKDLDDDKTMANFLVCGDSSHGLLRFFTGDGCYFTTNEQVAEELMKKGKRVHIVDPKEFFGNQTINLE*
JGI25381J37097_10005213	F007915	GAG	MSLAEAAKPALPSSTIRSYAMIGIVLYTFGLVLNEIGNGLAQKWLVPYADTISALGFVIALYTATLAGLGTRLTVVIGLIYGIGFFYVSEPDTTYLDSGFKIASYTHYVGLGLIGFTMILLIALAFYLTRAKSGHRTLLKQDPGSTS*
JGI25381J37097_10005214	F005700	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTIVVVYVGVPLLIWSLLVDRLASAVLRIICRLRESSGHQYYFERQVGKPGISRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWASRWLSSLGGIGAFISFAIAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAITMARLFPQVSGPSLPSSSAPTLRSVRVSEDTKQTAEPHS*
JGI25381J37097_10005216	F005263	N/A	LERRTRRTFTIDPDVSEKIDKMVGGHNLEVNVLVNRAIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVGEAREMGTKNGKDTVVEFILYYFRKFDLDSVLKTFEVIGAEYANAYVYSEFGDKDSRTIILRHSMGLSASAYYGASFKALCDRLGVKCE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25381J37097_1000521

Overview

Ecosystem & Geography

Associated Families

Sequences