NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24694J35173_10051593

Scaffold JGI24694J35173_10051593


Overview

Basic Information
Taxon OID3300002552 Open in IMG/M
Scaffold IDJGI24694J35173_10051593 Open in IMG/M
Source Dataset NameCornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1910
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013655Metagenome269Y
F025312Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
JGI24694J35173_100515931F025312N/AMKTKELGWNETQGIQNIDIEDSQGNSIVDQSQVLKIWENYTTELYVQPIRPETLEVETEEEVHTDEK
JGI24694J35173_100515932F013655AGAAGLQKLNTQRQRVQDTLEEKLGAIGCDRGNVEVQWNNIKECVLDTVSDLVGKVEKIARKQWITQEMISKMDERRKWSNVNTEEGRKKSGG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.