NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24927J35514_1009526

Scaffold JGI24927J35514_1009526


Overview

Basic Information
Taxon OID3300002524 Open in IMG/M
Scaffold IDJGI24927J35514_1009526 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F024889Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
JGI24927J35514_10095261F024889N/ASATIGALMIVGVVILYIFALCYVEDKIARQENEKLKKNIDKLNDKA*
JGI24927J35514_10095263F008782N/AMKKPIFRVFVSYEIKNKKVVTRKAITGILDTFVLTSNIKEIESDQELIDRICYINKKNLHKVDVIITSIDIENQYGETTDRFEDEY*

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