Scaffold JGI24927J35514_1003786

Overview

Basic Information

• Taxon OID: 3300002524
• Scaffold ID: JGI24927J35514_1003786
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1376
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005038	Metagenome / Metatranscriptome	414	Y
F053631	Metagenome	141	Y
F099988	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24927J35514_10037862	F005038	AGGAGG	MKAKDINIYNIFSATYKKRKMFSFIGFGELSLMPKVKKPIRQISNVYQFPIKQYYNQRKRAK*
JGI24927J35514_10037864	F053631	AGGAGG	MIRSIYFALCFGLALFGLLVVTHISIPIGLIMFFIFIIKFLLMLPKYQED*
JGI24927J35514_10037865	F099988	AGAAG	MVMNISSTELIKGGLMKTEFILYGLKLNEPDYLESIIHTSFNRNEIDKVKTLAIKKGYVKFRVATFNGEAPNFADPKLINV*