Scaffold JGI24927J35514_1001164

Overview

Basic Information

• Taxon OID: 3300002524
• Scaffold ID: JGI24927J35514_1001164
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3377
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24927J35514_10011643	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGVKSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIXKNN*
JGI24927J35514_10011646	F016596	N/A	MTNKYTLVQIRESRNEFEALLRIYGVSNLKLCKILGVNYATSRKFIENPPSLRFIHAKTLADFIGLKTQDIVDTIVYDLN*
JGI24927J35514_10011647	F018080	N/A	MECLDIEIFNHFLKTYTYIIWNKKHLLGEIVEDDMMKMLDKQQLIDFYHVGKTKFKVEKSKIEKYIKRDDK*
JGI24927J35514_10011648	F014804	GAG	MNDDWIDNILDGEPSGITDTQWLIIESNIDLTSFTETMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF*