NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25130J35507_1078245

Scaffold JGI25130J35507_1078245


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1078245 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081216Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_10782452F081216GGAMNFQVGDLITLKHHRGNPDAPPPLAIVVGLEALVFDRIMIQHRGTSGPEMAAPGHWKVVSTIESVSKKG*

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