Scaffold JGI25130J35507_1009911

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1009911
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2417
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10099114	F003706	GAGG	MSEVSDVEIGRLIEKVNSLEEAVRSSNERLDKLDYQLERTRGIGIGVVLATVGLSGVGASLFTRWLGN*
JGI25130J35507_10099115	F003515	N/A	MKCLCILLWVLCVASSSVLAGPPKGMVRQMIPFPAMCLPATEARNHFAVLMGELIADYGVHISMTFSANQDQSQRVAIIENPATGLAGVLMITDEQTCIAFSGEDRKTFIRPPDHPIGKANEDVSS*