Scaffold JGI25130J35507_1006883

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1006883
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3024
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F021552	Metagenome / Metatranscriptome	218	Y
F024807	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10068831	F021552	GGAG	MIRHLIGKSLSTCTKDILDGTIDEGEVLLICTSTRHPFDEPAHFYDMRFFDNMEESALVQRLWNQGRIHQPRMCSDSYNMGKQEYLFPYDNYRHKVWYSIKDQALTDLEDKPEEEYSEELEDAMITILGGPDYNGATVLLT
JGI25130J35507_10068835	F020384	N/A	MHHKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLXRLSEYPTFFVDNTRKNPGRVASDRGRPSSVRWDVAAMMASPKGGPDRNWWRPPPRPAPVKHYTREELENEYPAFTXRKEREDAT*
JGI25130J35507_10068836	F024807	N/A	MRSAKPHLQHTGTKMTKRMLPFNLVYHDKDQQLTLALHDNPVTXTRDEVDGLIFHLDSFLFDMDRERKPKPSVEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED*