Scaffold JGI25130J35507_1005925

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1005925
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3305
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017121	Metagenome	242	Y
F021532	Metagenome	218	Y
F065675	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10059251	F065675	N/A	MKHHLKAFERFLNEADDPSYYQETFYFTILISMSKDTGGSRDETKNDIRALPEVLTVTLIEKEKGGVQRDLGTKYLSTLKLHVRLPKGASKALMMKRMVLLINNLRGVSVLRYKERKVP
JGI25130J35507_10059253	F017121	AGGAG	MFSLIQKILNLAQSLNALYKRIDTLEAKLERFEQLADENEALWQFLDEQKENDKLFVGSPEEFEEEFTDIMVRAMKPRGDA*
JGI25130J35507_10059254	F021532	GAG	MKKEVIILKEKWNPAAHDAPTARALEMVQVVEDEFVETPFPLSLDAQKRLLELIYNRKSGIITRQELINVLFNPEDTESGTIIKCLI*