Scaffold JGI25130J35507_1002980

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1002980
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4918
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013189	Metagenome / Metatranscriptome	273	Y
F050757	Metagenome / Metatranscriptome	145	Y
F077378	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10029802	F013189	GAG	MQEIEKNLKFVAQEHTVAKNVAEHLEKKYPGWAWAVHVMDGVVVVKSMRLSGNWGFVLHEDKIDNDYKAVTRAGGEILERYRQKTNGFNQDRYMDLTMDHKNQLDGDFSPGTS*
JGI25130J35507_10029803	F050757	N/A	MKKKDGTTEYSWSELAYRIDPELSAPEKVYVFDKGNRVFYQPRKRINVNHARNRKKS*
JGI25130J35507_10029805	F077378	GGA	MPKAKKKEEVPQNVVSIDGSEYEFDSLVDEAKVAISHIAQLEGEINVLQMKLVQLNAARSVFMAQLKESLPE*