NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25130J35507_1002911

Scaffold JGI25130J35507_1002911


Overview

Basic Information
Taxon OID3300002519 Open in IMG/M
Scaffold IDJGI25130J35507_1002911 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_300
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4983
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086172Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
JGI25130J35507_10029119F086172N/AMDTLYQEAINNRIQYHSEQIGRIKELVNQTLEWSQPRKLFKKKRGNTTFAPYKVSTGTIGVYKIIYDPTGEIASIGCGIISSRLSRHKSVFLNKGIAIDNPGGTSNSSATGSHMYKHDTHRHNWSFIWCSITNRSLADEYEDILIKTENPLFNNEGMGGK*

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