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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002519 Open in IMG/M |
| Scaffold ID | JGI25130J35507_1002029 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_300 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6072 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | 300 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001992 | Metagenome | 607 | Y |
| F003616 | Metagenome | 477 | Y |
| F004658 | Metagenome | 429 | Y |
| F022118 | Metagenome | 216 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25130J35507_100202911 | F001992 | AGG | MVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATISGGSFLNSIAGFFNIKFPDTLPEWLTKLFTTGWNGVAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRIINGQ* |
| JGI25130J35507_100202912 | F000730 | N/A | MAFTNIQKIGYLILVNELIPPEIIPLVWFSCISVTIYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI* |
| JGI25130J35507_10020292 | F022118 | N/A | MITIPDFKCSKQSSHGREERIEFIISEVKKHPDFHFEGAAYTKEKCSDLASVDDLINLCLRMMHYAPQTRKDITEQILMELKII* |
| JGI25130J35507_10020295 | F004658 | N/A | MPEYLKKVYDFFKTNNTAKDVLIGSVSFIAGGFVLDRILRRDEDQDEDS* |
| JGI25130J35507_10020298 | F003616 | AGGA | MIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVTCRICKGTGLNAITHESGLVTLNKCVLCKGIKRRSNRI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |