Scaffold JGI25130J35507_1001565

Overview

Basic Information

• Taxon OID: 3300002519
• Scaffold ID: JGI25130J35507_1001565
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6996
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999
  • Depth (m): 300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F041307	Metagenome	160	N
F065114	Metagenome	128	N
F075333	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25130J35507_10015651	F065114	N/A	NLNLETPLLRGDSHAVMPSLGHGTGLSYRERETSESVSIGGLGCSGKVGAVGVPAYQTMNKHLMPSPLNLSLYNLEYLMSIFGVSERTEVTTDSASKVASGVKQKTQRLTDLTGDGYEKE
JGI25130J35507_100156513	F021867	GAGG	VELKGCINKEDNIMDNNVEQVDWGKVNRGKVRYGFALELYKRGGDLKPSEIGXIEAFVEYVMEGPDYYPTDEGKPDKSRPKLMPVEECKXVITTESEGSKAFVKAMVHIDAEGLNDNDLEKVLQALKAGKITMDNLQASLDKIQIIKSSYX*
JGI25130J35507_100156519	F041307	GGA	MTNERTDEPVLFCGASTGYETRVSPLPECWLKMTQAMRTKYRKQKRAEYEALNPKKLDYKVI
JGI25130J35507_10015652	F075333	AGGAG	MKKNSMRYLEGLVERGVRKHLPALKHFRYRERGIESIVNGVVPTEHEDLMTVTKTARWLTTRAPEEYIYGDMVDIDNAIASNIAQYLTNYAKSYIGKVA*