Scaffold JGI25134J35505_10088090

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10088090
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 696
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024106	Metagenome	207	Y
F029400	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_100880901	F029400	GGA	MKIGXLVTFCPEAWGTPLEXRPLGIIMNVEDYRDGMGPIFTFTMVTAIFPGDDIPYSSNIKDFEVVNENW*
JGI25134J35505_100880903	F024106	GGA	MNFQVGDLITLKHHPGAPIAVVTSLDALVFDRIMIQFFDTSRPEMAAPGHWKV