Scaffold JGI25134J35505_10018041

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10018041
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F035079	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_100180414	F002330	AGGGGG	MFQFSINMILFDIMLKQINQINKQLKIGDEFTIYYVPTFTKNGEEQTTIYAPHQYEVNVRSAIWDEKCKINKTGSLTYFDVKKSSYRTAIQTLQPIRIYKNKIMYVWKEGK*
JGI25134J35505_100180415	F035079	AGG	MRIETLKKAEEFKQGHLNLVQYFLKKGCXFSVEDLETDKMTVENSSNYEDIKKAINGGETHLSIFKKNVGLVSKVWIIPYNEGIDTIADYTVSNWIDDWSNKFEKIMDQLN*