Basic Information | |
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Taxon OID | 3300002518 Open in IMG/M |
Scaffold ID | JGI25134J35505_10017999 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2200 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008649 | Metagenome / Metatranscriptome | 330 | Y |
F035803 | Metagenome / Metatranscriptome | 171 | N |
Protein ID | Family | RBS | Sequence |
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JGI25134J35505_100179992 | F035803 | AGG | MREKKEMNEMTKLTFENVPQVTYWRNPNSGVIYHCSIFRNTWVESDEFEDGGYSYDTEKHWINISSINTKVERTYYYNWDQLVEKFEFLCTSDDVDEDYYVNILANKRLYREFRYCKDRLPRLRRLMKSEPDSHWLDDYDEMVANVEKYNNLETFELEF* |
JGI25134J35505_100179994 | F008649 | AGGAG | MTNLETLMLDVTNTLNHNGFDEVRITPQGGEDFSIRVGYWDIIPASLIETMEEYHSVRITEDIIEDEDCGELHYYFVEPVDEDTGYTLSELNDLESNYTEEEMYLESVGADDGWGVA* |
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