Scaffold JGI25134J35505_10013811

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10013811
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2603
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056665	Metagenome	137	Y
F072515	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_100138111	F072515	N/A	KKRIDKLLKTEKIQKMVKEEIREILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTEEKKSEQVTVWAGFKPEQLAEVEKHGKPELVAHAEREE*
JGI25134J35505_100138114	F056665	AGGA	LICLVAVLIGLETEREKPKPIPLGAGDTLMVRIVGYGFCPQHCEIDHNHIGHYKNYDCEEQKCEHITINEK*