Scaffold JGI25134J35505_10009627

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10009627
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3279
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054922	Metagenome / Metatranscriptome	139	N
F059353	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_100096273	F059353	AGGAG	MGKLSVTDANELLDKGIITKDTLAKMQKDGLVSTRSKSAERYIQSDSGTWVTPIFYFRGLSGDKYTTEMTELRTEVSQVIEKHTVNKHEVVKLETVNRKTSKGANGK*
JGI25134J35505_100096274	F054922	AGGAG	MIETKTTYNETTDGFVPSPEGIYPCHVIAVNSREYNGNRVFNFQFQVADEVSKLQLPKMVSDGNGWYVTATNDKGDVVTQPGKPFVGRKFYSKGVWFTPDPIKEERWKNRTYKDFCENLGVTFRTDGDNTILDEVEETDVIGKPCLAKVITNEYEKDGETKRTMQVGSVTTWKDGVVLSADELDSDVPF*