Scaffold JGI25134J35505_10002703

Overview

Basic Information

• Taxon OID: 3300002518
• Scaffold ID: JGI25134J35505_10002703
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6864
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F032241	Metagenome	180	N
F041307	Metagenome	160	N
F087314	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25134J35505_1000270317	F032241	N/A	NEKALSTLTEDIKNKGLYYPIIVSPFVKTDSNELMLGDRALKHKDRKWWILDGERRWLSAVNLKHKTIDAMVRTNLSMLEMLEIQFASNTKRLNVTVTEMSKAVLRFRDEYKKEHGEYNESDFIKSLCSLTGFSSSYFTMVEAINRADEDMKHSVLADEVGGYAPYEIEKATKNENFRRGITDAYLESKKHISALAPRAIKYDLKVIESEESLKPNEERTLAKQMINDFNNQSGRTRDVESHFLLYKQKAMKFLREVQHWNLNGLTTPEVATLVGLMESVYNHFKEDRRLNGQMFASNMGENIFGKATEKTRGMTNGR*
JGI25134J35505_100027032	F041307	GGA	MTDSKSDKTFLFCGMTSGYETRVEPLPECWLDMSKPAQTKYRKQKKTEYEALNAGALDFKTVGSKRYKKSY*
JGI25134J35505_100027033	F087314	AGGAG	MAFEHKENTATVFANXKKSADNQPDYTGKGKVGDELMEFAMWKRTAKSSGNEYYYMSFKKPSEKFGNKGQSKPAF*
JGI25134J35505_100027039	F021867	GAGG	MENNENVNWEKVNRGKVRYGFALELYKKGGILKPSEMGKIEGFVEYVMEGVEYDTTDEGEPDKSRPKVMSVEECKEIVKTTTEGSEAFIKAMVHMDAEGLKEKDLDKVLEALDKGRITMDNLQDSLDRIHRIKESYK*