NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10170262

Scaffold JGI25133J35611_10170262


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10170262 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105147Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_101702621F105147N/AMSNKKEWLYEKLNRLVKLAKATEPDQPDDKHLFQPSTIEAYDLLMEVXQRYDEMRPHEIKEIMVEANKIWKFRRKVWNGDVDWNWQSQLDHELEDMLKQGAKIAAIKHYRAECEK

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