Scaffold JGI25133J35611_10052378

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10052378
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041753	Metagenome / Metatranscriptome	159	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100523782	F041753	AGGAG	MTNYQVHFEYVRSGKAWVQRGMRTIKARNEAEAIIKAKSVVEGSFGHWVNRLANEVA*
JGI25133J35611_100523783	F080510	AGGTGG	MSWIQEDGLRRNKQGILLRKNQDRAPDIKVGDRFFDCANGRWATLLRIRPMEEALGAPFEALYDGCDRFAPFIGVAMHCDIGDVS*