Scaffold JGI25133J35611_10041075

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10041075
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F048570	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100410752	F012401	AGGAGG	MIDGILSLEKAALERLTEDRIASGSLGEEVEEVLSAAGIYWDFLNQEYFSIDNFQRETFERLAAEYASQDYA*
JGI25133J35611_100410755	F012463	GGAGG	VKIGDIVKLIAEPQVDWMFNYLEETFQVLDFPTENGVELKMLGTVPDWIWIIGKDNLELTDEEG*
JGI25133J35611_100410757	F048570	GAG	MKIGDLVRCRPRTEDENYDAWLGLIIGENFSGQHTVQWVCSDGRGDVEKVNHTPQELVLVNENR*