NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25133J35611_10029917

Scaffold JGI25133J35611_10029917


Overview

Basic Information
Taxon OID3300002514 Open in IMG/M
Scaffold IDJGI25133J35611_10029917 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2042
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023118Metagenome211Y
F025517Metagenome / Metatranscriptome201Y
F067827Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
JGI25133J35611_100299173F067827AGGMEREGDLGNYLRFNFENAVEMIDKLTKDNNALLDKIEELEIKLYNKEMPSIKREPLQTRFAEISKEAKTAMERFTAKLKKEIDKNAKSKQSQGQPV*
JGI25133J35611_100299175F025517N/AMYGINAKLPKSLFTCFMCRTTKIQESYIWGNFAIPPKHPYEEQRICKKCAVKEHGKKNKLDNVIDERTKQWLKKQQ*
JGI25133J35611_100299177F023118AGTAGMSGGRLKAXQDMFKRVLLENVELKRKVRVLEEILRSYIPILSRRKKDE*

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