Scaffold JGI25133J35611_10026159

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10026159
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037480	Metagenome	168	Y
F065120	Metagenome	128	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100261595	F065120	GGAGG	MQVGSLYRFDHINGHTTTVNGRMAIYLGEAFIRRDDGVTIENHKVLMVGNTSPTIIDRGLLKHMREVRA*
JGI25133J35611_100261597	F086310	GGAGG	VRVGDLVKHFLTEQVGXVVTIHNAASSLASVQVLWTTQGDSLFGPGHKEWCSKNSLDLLTSS*
JGI25133J35611_100261598	F037480	GAGG	VKVGDLVMWPDSENEATGIILRTKPDGINRGTPRLTRVRVYWIEDAEASWEPIEWLEVISESR*