Scaffold JGI25133J35611_10014907

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10014907
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3244
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F054357	Metagenome	140	Y
F057683	Metagenome	136	N
F092859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1001490710	F004163	AGGAG	MKQTLEQLKRIVLELKQYFEKSLPLILIGAALGYAFAQHLEAQTPKDIGFATVEDMSFLVQELKDCRDNAGSLDGSY*
JGI25133J35611_100149074	F054357	N/A	MANVAYRRGDIIMHPMAGKAWLHIAEVKFSGHRGYVYECINQKTGKKVTLSAENDSIKLVSETRKR*
JGI25133J35611_100149076	F057683	AGGAG	MSIKDNLDRKTYGDLMYRLGQMDAILEDLKGTISRFHEESRRIREGQPPHIVRALDEVLQRNAQIQNQQHPMHPHTDDDDVIGRTPAAQEAEE*
JGI25133J35611_100149077	F092859	AGGAG	MSNNNTDTITISENSEXKDTTVTXPLQFKAKLGVPQELIDEGNRALRRFKWTMFALVGGYIALNIYVAYLQVSP*
JGI25133J35611_100149078	F012625	GAG	MDPVHNKEISVGDLVKEHTYRSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKFINGEYKDILQEYIKGKRW*
JGI25133J35611_100149079	F022314	AGG	MVKTREILKLGDIVRLVSHEPPEDPFHSFPTEEIDRMGVGLVVSIEELNSYKDIPEKKWVEYTILWSGLGEQLKHLGFDLIKITGADI*