Scaffold JGI25133J35611_10014243

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10014243
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3338
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100142437	F016673	N/A	MESESNLEDIAIKSYLELYLRSLNDSKPQKFINIIKGRMLELIKRKQLRNK*
JGI25133J35611_100142438	F067830	GGAGG	MSDKKSKLVIVDEIGNDKALAYRNKPSVEIYPTTKEVGFSEFSYSWEEIIAVGKKLEELYRKSLADVL*
JGI25133J35611_100142439	F010920	AGGAG	MSEIKLYDVLISYPIQVGAEDEKHVREIIMANELLRNAADLTLQITEVKPDE*