Scaffold JGI25133J35611_10013912

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10013912
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3385
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F059351	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1001391210	F002594	N/A	MAKVPISRLNSAPLEYKQNDFNQLIEDLQDMVKILNSTYPKDQNDEQDRKEFFLSG*
JGI25133J35611_100139125	F059351	GAGG	MTQKIKVTAEMEIENDMAIDSLSLDTSLGLLGTIKSYDVEYEEKKEEGPKLTYEQVKEKYFHKDLRKDIIRTQILSAFITQESDKFHDFAVEAIDEAVLKVEFEEIPEQDHELVTEILNDEYYHEVLAKKELKDKHGIE*
JGI25133J35611_100139128	F011527	N/A	MLVYFQFRRCGYYAKGLIEADNLDVAEKALWSEHVGTFRWEPTLNYIPDDANSLTIEEYKYEPSSDGKTEPEKKFGSQVG*
JGI25133J35611_100139129	F024421	AGGAG	MSLALMEKLNQKRNLEAKWASEFLANGAVTVEMVNISKEVKKLEQELKDDSEKQP*