Scaffold JGI25133J35611_10010309

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10010309
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4102
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017126	Metagenome	242	Y
F024107	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100103092	F024107	N/A	MTIQDANYLEFSTYVDYNKPFYSNLFGRDLDNTKVRADEWYLKPMYEQLSFTSYDKASGHFNNDISYNSRSVIVVGTELQIYNKFCEMIEKHGWQLQDSWDRELKPEYLKHYKSNNNSPIIINLI*
JGI25133J35611_100103093	F017126	N/A	MKYKIVNRNTGATYFLNSQEYATFVQRNSFFKDGVCQYDEYNLTKEKARRRNKMLDLVAHLCIIGASILGTLLYIQNYC*