Scaffold JGI25133J35611_10006313

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10006313
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5537
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F057748	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000631315	F057748	GGTGG	MTKVYDFDWHRLQKEDILRKSLGYSTDVWQLMKESGYNVNSVEDREKFFKDLEDLE*
JGI25133J35611_100063134	F029404	GGAGG	MTTVDFVEVELGGDKWKISWDYGRRKKVKTTGEKAGLMYTIYSLTELTPAQAYDIAMMQLEWLKRDQVYVI*
JGI25133J35611_100063137	F040869	AGGAG	MEMKVFDQVYSELTLLQQEDKDDLEIAEQSLMAAMVFTMTHAPSVLNGLCLISNTFNGILAEYTLKDIQLKGE*
JGI25133J35611_100063139	F048634	GGA	MNTIEAVEETLELLSQLQLNGRVTMTNSDKVSQCIQQLELIRFNLKMKENQNV*