Scaffold JGI25133J35611_10005869

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10005869
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5781
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034754	Metagenome	174	Y
F046990	Metagenome	150	N
F084111	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000586914	F034754	GGAGG	MKVGDLVDINQERGSGIYKDVTPRGLGVIMRLEEVEDLHYESIGPINLGPIVHVLLNTGETEGFHPTSLEVVCEAG*
JGI25133J35611_100058694	F046990	GGTGG	MTVIRRRLKVGELVEVHKDIDPLDDWSKGKGMAVILDTDPDPERPGLLEVRYVKPRGLPEEQLPIQTLINHFSCRRIK*
JGI25133J35611_100058696	F084111	GAG	MRHNWDPNDQQNWEMNCEAERAAKVRPLRDYNGDILNTGDLVWLTNRVPRELALVLGESHGENVLVRYIKGGLDFAIYEMDCEKVKKNETIL*