Scaffold JGI25133J35611_10005281

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10005281
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6176
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011121	Metagenome / Metatranscriptome	295	Y
F103070	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000528116	F103070	AGGAG	MKTKWLFNTTEKLVEFVKGFEEQQGKTLDVNYFKLVAVLRDKKENRAVDQESDKYIDRELGTIDSITDMKRAENIQRPIETRWMTRKPTTMTKETERRNK*
JGI25133J35611_100052816	F011121	AGGAG	MPASPISKDITLPDNWVHLQKTMIPDSTTSSYWSVWYDNTGVSPDRDEEEGTAWLMWCPFGDDPSVNDSWGHAEEIDESCRNVLTAIESVYGVSFHDSIWVEMGAGEVLPSLAAK*