Scaffold JGI25133J35611_10002343

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10002343
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9855
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F056907	Metagenome	137	N
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000234310	F021867	GAGG	MDNNENVNWEKVNRGKVRYGFALELYKKGGILKPSEMGKIEGFVEYVMEGVEYDTTDEGEPDKSRPKVMSVEECKEIVKTTTEGSEAFIKAMVXMDAEGLKEKDLDKVLEALDKGRITMDNLQDSLDRIHRIKESYK*
JGI25133J35611_1000234311	F056907	GGAG	LPTGEYEAVITSLEVAENVKCGGFIADIFKPVYRVVHPEYQNTDVKDNGVFRYKEKAGYSFKPSRNWGFAKLCGILGLDKEEEGKVTLPYLEFEMMNGFKVIIEISYKNFVNESGNPVSYPVAXLKKKLGEVPF*
JGI25133J35611_1000234312	F074138	GGAGG	MDWNKLYIHPSDDTTDEDIRDFIEWVSRKGERLGFKVELKWHEKSXSGSTDVMSTNPLDKSDETH*