Scaffold JGI25133J35611_10001021

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10001021
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15344
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F028618	Metagenome / Metatranscriptome	191	Y
F035959	Metagenome / Metatranscriptome	171	Y
F051056	Metagenome / Metatranscriptome	144	Y
F092707	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000102110	F008778	GAGG	MSRSGALSQIDTLLSTISDPAFVAVYRGEPLAISGSPVLAYWLTGRIAAFETLGDIGSRVSVMVRAYFRMQDSPDVRESIEEAVWDAMYQIDAKLRSDANLGGNVTDSNVGPATIGYVNMGGGVFRTVSVPFEMELMGEVTITP*
JGI25133J35611_1000102111	F051056	GGA	MPTPQTTFKVKGPMFDAPSQVSLGLTEAVNRGLFDLATIEGSNFVKKQLYGDEENRHGRISANLRNHIGASVPRDNVAQIDAGEFRYGRNLIYSSWIEGISKRNRARPGFPGYQMFENAYNHINNNPKLYEEYIGDAIVEAMG*
JGI25133J35611_1000102113	F035959	AGGAGG	LAKAKSLVNVTFGATGDVYEKGKIYDVPAELLEKYPDYFKVKEAKKPTNKQQETQENK*
JGI25133J35611_1000102115	F028618	AGGA	LNTSEIRKEANALLTNAEASLTDGNVEQFERQIADAQSKMANADQIDQAQSQLKTLKGDFNKPLNSVPVADKDVAVYDPNDSTSRTKASYKPASWVKGLPAMAQPLWVQEKMGVTEKEQADFQTDTFIKWMRSPSDDVFWKTASLDEVKAMQEDTDSEGFVKSAPLSSVTM*
JGI25133J35611_100010216	F092707	N/A	VGERGDIGGGTLRLDIARWKAVRGGTYRDGSPVVKPVELETAEMVDNLCQRYGCPPSVILRENVGILKMLHIISEGKVEDDGERNNNSG*