Scaffold JGI25131J35506_1019561

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1019561
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 931
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F003952	Metagenome	460	Y
F041444	Metagenome	160	Y
F089040	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10195612	F089040	AGGAG	MDKLQLEIIKKVLMLSTKTELDTVRENVSDAISRECDRDDHDQEEFKKWKENQVNV*
JGI25131J35506_10195613	F000319	GGA	MFKDLLFIILGVIISHAYFYWQDYKDKKEIKKQERLNEIKTD*
JGI25131J35506_10195614	F041444	N/A	MKSKQIEECKEQTKILFKVVDKLEQRISTLEKVIGKLQLRLGDVVLYIDKKAEQNDL*
JGI25131J35506_10195615	F003952	AGG	MIYNLILYLGLFFLVGGFSLFIYSEIRLREIDIQLFKLEQKI