Scaffold JGI25131J35506_1012710

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1012710
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1160
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F032038	Metagenome	181	Y
F049041	Metagenome / Metatranscriptome	147	Y
F081756	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10127101	F032038	GAGG	MSDETKDKKDIWLVIEKYVYTNSSSTHSVKKTAYSVEEAIGFKLALEKLNEQKDVSYFLASDVDTVLANVAEHHNKSVENGTYYKKQEPFYKQVEKEVV*
JGI25131J35506_10127102	F000423	GAG	MSNELKQSIFYIKYYADKHGMIIERKATLDENCFEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRTASIKWTINNERTLT*
JGI25131J35506_10127103	F081756	N/A	MIDYNLILYIGLFLIALGFILFIVSEMDKRRIDRELFHQQQLTKSFERNKK*
JGI25131J35506_10127104	F049041	GAGG	MNKSKEEIKNLYNVVDKLEKRIFTLEKVIGKLQLRLGDVVLYIDKKAEQSK*