Scaffold JGI25131J35506_1004116

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1004116
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2081
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F002744	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10041161	F002744	N/A	TAXATAANTRTEGGSMTIQGGNEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT*
JGI25131J35506_10041162	F000704	AGGTGG	MPHLETDVQPSKVKSVSVYNVGDYGNDMFLPFTDVGLTETAITFSTSTLTRDTEDSNQPMDDFPAVYSDTDSGILLNEGNDSAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGIVNLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ*
JGI25131J35506_10041163	F000730	N/A	LVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVKDEQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*